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zinc finger (C3HC4-type RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838447, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (C3HC4-type RING finger) family protein
Primary source
TAIR:AT1G18660
Locus tag
AT1G18660
See related
Araport:AT1G18660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6A14.25; F6A14_25
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Sequence:
Chromosome: 1; NC_003070.9 (6420856..6425898)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LONGIFOLIA protein Neighboring gene glycine-rich RNA-binding protein 6 Neighboring gene 3-phosphoserine phosphatase Neighboring gene plasmodesmata callose-binding protein 3 Neighboring gene Protein kinase superfamily protein Neighboring gene HNH endonuclease domain-containing protein Neighboring gene Galactosyl transferase GMA12/MNN10 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The IMMUNE-ASSOCIATED NUCLEOTIDE-BINDING 9 Protein Is a Regulator of Basal Immunity in Arabidopsis thaliana. Wang Y, et al. Mol Plant Microbe Interact, 2019 Jan. PMID 29958083
  2. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001332356.1
NM_101724.3
NM_179356.3
NM_179357.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
zinc finger (C3HC4-type RING finger) family protein
NP_001319035.1
  • zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564060.1
  • zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink).
NP_849687.1
  • zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink).
NP_849688.1
  • zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12352 Blast hits to 11899 proteins in 1704 species: Archae - 10; Bacteria - 756; Metazoa - 7295; Fungi - 938; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6420856..6425898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332356.1 → NP_001319035.1  zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4ICB5, Q8LDH8

  2. NM_179356.3 → NP_849687.1  zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849687.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKL0, Q8H0X2, Q8LDH8
    Conserved Domains (6) summary
    PLN03088
    Location:42 → 161
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    COG5243
    Location:167 → 254
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:42 → 67
    TPR; TPR repeat [structural motif]
    cd00162
    Location:196 → 233
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl19481
    Location:278 → 479
    LON; Found in ATP-dependent protease La (LON)
    cl17238
    Location:193 → 234
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_101724.3 → NP_564060.1  zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564060.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKL0, Q8H0X2, Q8LDH8
    Conserved Domains (6) summary
    PLN03088
    Location:42 → 161
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    COG5243
    Location:167 → 254
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:42 → 67
    TPR; TPR repeat [structural motif]
    cd00162
    Location:196 → 233
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl19481
    Location:278 → 479
    LON; Found in ATP-dependent protease La (LON)
    cl17238
    Location:193 → 234
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. NM_179357.2 → NP_849688.1  zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849688.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKL0, Q8H0X2, Q8LDH8
    Conserved Domains (6) summary
    PLN03088
    Location:42 → 161
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    COG5243
    Location:167 → 254
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:42 → 67
    TPR; TPR repeat [structural motif]
    cd00162
    Location:196 → 233
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl19481
    Location:278 → 479
    LON; Found in ATP-dependent protease La (LON)
    cl17238
    Location:193 → 234
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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