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DDT domain superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838476, updated on 18-Sep-2024

Summary

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Official Full Name
DDT domain superfamily
Primary source
TAIR:AT1G18950
Locus tag
AT1G18950
See related
Araport:AT1G18950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14D16.10; F14D16_10
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (6546177..6552108)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Nodulin-like / Major Facilitator Superfamily protein Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene germin-like protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SLIDE, the protein interacting domain of Imitation Switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes. Dong J, et al. J Integr Plant Biol, 2013 Oct. PMID 23691993
  2. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article
  3. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101752.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ISWI-type complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RSF complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DDT domain superfamily
NP_173329.2
  • DDT domain superfamily; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41; Bacteria - 1919; Metazoa - 8043; Fungi - 2539; Plants - 1031; Viruses - 220; Other Eukaryotes - 6500 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6546177..6552108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332379.1 → NP_001321622.1  DDT domain superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCD8, A0A1P8ARG8, A0A5S9V2E9
    Conserved Domains (2) summary
    pfam02791
    Location:138 → 186
    DDT; DDT domain
    pfam15612
    Location:232 → 262
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1

  2. NM_001332380.1 → NP_001321623.1  DDT domain superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAJ5, A0A1P8ARH9, A0A7G2DUA5
    Conserved Domains (2) summary
    pfam02791
    Location:138 → 186
    DDT; DDT domain
    pfam15612
    Location:232 → 262
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1

  3. NM_101752.4 → NP_173329.2  DDT domain superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173329.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IDY7, Q9LMD2, Q9LMD3
    UniProtKB/TrEMBL
    A0A178WAJ5, A0A7G2DX91
    Conserved Domains (2) summary
    pfam02791
    Location:138 → 186
    DDT; DDT domain
    pfam15612
    Location:232 → 262
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IDY7.1

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