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myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838477, updated on 18-Sep-2024

Summary

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Official Full Name
myb-like HTH transcriptional regulator family protein
Primary source
TAIR:AT1G18960
Locus tag
AT1G18960
See related
Araport:AT1G18960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14D16.11; F14D16_11
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (6552752..6554036)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nodulin-like / Major Facilitator Superfamily protein Neighboring gene DDT domain superfamily Neighboring gene uncharacterized protein Neighboring gene germin-like protein 4 Neighboring gene RmlC-like cupins superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101753.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb-like HTH transcriptional regulator family protein
NP_173330.1
  • myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 5693 Blast hits to 5684 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 67; Plants - 4922; Viruses - 3; Other Eukaryotes - 403 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6552752..6554036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101753.3 → NP_173330.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173330.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ECM4, A0A7G2DRQ9, Q9LMD1
    Conserved Domains (1) summary
    PLN03212
    Location:5 → 122
    PLN03212; Transcription repressor MYB5; Provisional
Nucleotide Protein
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