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GLP4 germin-like protein 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838478, updated on 18-Sep-2024

Summary

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Official Symbol
GLP4
Official Full Name
germin-like protein 4
Primary source
TAIR:AT1G18970
Locus tag
AT1G18970
See related
Araport:AT1G18970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14D16.12; F14D16_12; germin-like protein 4
Summary
Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).
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Genomic context

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See GLP4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (6554496..6555610, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DDT domain superfamily Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene myosin-binding protein, putative (Protein of unknown function, DUF593) Neighboring gene Homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101754.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
germin-like protein 4
NP_564067.2
  • germin-like protein 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6554496..6555610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101754.3 → NP_564067.2  germin-like protein 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564067.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P92995, Q29PR9, Q9LMD0
    UniProtKB/TrEMBL
    A0A178WAW6, A0A5S9V337, A0A654ELW1
    Conserved Domains (1) summary
    cd02241
    Location:29 → 218
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P92995.2

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