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Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838514, updated on 18-Sep-2024

Summary

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Official Full Name
Pathogenesis-related thaumatin superfamily protein
Primary source
TAIR:AT1G19320
Locus tag
AT1G19320
See related
Araport:AT1G19320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O14.4; F18O14_4
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (6679281..6680252)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene histone deacetylase complex subunit Neighboring gene Methyltransferase MT-A70 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101789.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pathogenesis-related thaumatin superfamily protein
NP_173365.2
  • Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1); Has 1611 Blast hits to 1588 proteins in 180 species: Archae - 0; Bacteria - 48; Metazoa - 52; Fungi - 78; Plants - 1416; Viruses - 5; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6679281..6680252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101789.4 → NP_173365.2  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173365.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WNM2, A0A5S9V4L4, A0A654EBB0, Q9LN66
    Conserved Domains (1) summary
    cd09218
    Location:27 → 246
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs
Nucleotide Protein
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