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DNA polymerase epsilon catalytic subunit A [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838540, updated on 18-Sep-2024

Summary

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Official Full Name
DNA polymerase epsilon catalytic subunit A
Primary source
TAIR:AT1G19530
Locus tag
AT1G19530
See related
Araport:AT1G19530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O14.29; F18O14_29
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (6763765..6765049)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RAD-like 5 Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene NmrA-like negative transcriptional regulator family protein Neighboring gene Glutathione S-transferase family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Mustroph A, et al. Plant Physiol, 2010 Mar. PMID 20097791, Free PMC Article
  2. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
  3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001332396.1
NM_101811.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anaerobic respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within anaerobic respiration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA polymerase epsilon catalytic subunit A
NP_564090.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6763765..6765049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101811.4 → NP_564090.1  DNA polymerase epsilon catalytic subunit A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564090.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WK40, A0A384LJ03, Q93WK6, Q9LN41

  2. NM_001332396.1 → NP_001322391.1  DNA polymerase epsilon catalytic subunit A [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WK40, A0A384LJ03, Q93WK6, Q9LN41
Nucleotide Protein
Heading Accession and Version

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