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GAMMA CA1 gamma carbonic anhydrase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838545, updated on 18-Sep-2024

Summary

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Official Symbol
GAMMA CA1
Official Full Name
gamma carbonic anhydrase 1
Primary source
TAIR:AT1G19580
Locus tag
AT1G19580
See related
Araport:AT1G19580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
gamma carbonic anhydrase 1
Summary
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
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Genomic context

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See GAMMA CA1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (6774683..6777568)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene dehydroascorbate reductase Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene defensin-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial gamma carbonic anhydrases are required for complex I assembly and plant reproductive development. Fromm S, et al. New Phytol, 2016 Jul. PMID 26889912
  2. Functional characterization of mutants affected in the carbonic anhydrase domain of the respiratory complex I in Arabidopsis thaliana. Soto D, et al. Plant J, 2015 Sep. PMID 26148112
  3. Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I. Perales M, et al. Plant Mol Biol, 2004 Dec. PMID 15821992
  4. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. Sunderhaus S, et al. J Biol Chem, 2006 Mar 10. PMID 16407270
  5. Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Klodmann J, et al. Plant Cell, 2010 Mar. PMID 20197505, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At1g19580 is required for complex I assembly and that reproductive development is dependent on the presence of complex I.
    Title: Mitochondrial gamma carbonic anhydrases are required for complex I assembly and plant reproductive development.
  2. AT1G19580 contributes to sustaining efficient photosynthesis under ambient (photorespiratory) conditions.
    Title: Functional characterization of mutants affected in the carbonic anhydrase domain of the respiratory complex I in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198110.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
NOT enables carbonate dehydratase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables carbonate dehydratase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photorespiration TAS
Traceable Author Statement
more info
 PubMed 
involved_in protein homotrimerization ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrial membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
part_of respiratory chain complex I HDA PubMed 
part_of respiratory chain complex I IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
gamma carbonic anhydrase 1
NP_001185039.1
  • gamma carbonic anhydrase 1 (GAMMA CA1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 3 (TAIR:AT5G66510.1).
NP_564091.1
  • gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6774683..6777568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101815.4 → NP_564091.1  gamma carbonic anhydrase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564091.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67XH5, Q682H9, Q8LF67, Q9FWR5, Q9LN36
    UniProtKB/TrEMBL
    A0A178WHZ1, A0A5S9V4N8
    Conserved Domains (1) summary
    PLN02296
    Location:1 → 269
    PLN02296; carbonate dehydratase

  2. NM_001198110.1 → NP_001185039.1  gamma carbonic anhydrase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185039.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HP82
    Conserved Domains (1) summary
    cd04645
    Location:55 → 179
    LbH_gamma_CA_like; Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FWR5.1

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