U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

glyoxal oxidase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838578, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
glyoxal oxidase-related protein
Primary source
TAIR:AT1G19900
Locus tag
AT1G19900
See related
Araport:AT1G19900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F9.4; F6F9_4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (6906899..6908805, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene male-gamete-specific histone H3 Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene Pseudouridine synthase/archaeosine transglycosylase-like family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RUBY, a Putative Galactose Oxidase, Influences Pectin Properties and Promotes Cell-To-Cell Adhesion in the Seed Coat Epidermis of Arabidopsis. Šola K, et al. Plant Cell, 2019 Apr. PMID 30852555, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_101845.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables galactose oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell wall modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell-cell adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mucilage extrusion from seed coat IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glyoxal oxidase-related protein
NP_173419.1
  • glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 833 Blast hits to 830 proteins in 167 species: Archae - 0; Bacteria - 311; Metazoa - 0; Fungi - 239; Plants - 262; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6906899..6908805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101845.3 → NP_173419.1  glyoxal oxidase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173419.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9J5, A0A7G2DRU6, Q93Z02
    Conserved Domains (2) summary
    pfam07250
    Location:45 → 287
    Glyoxal_oxid_N; Glyoxal oxidase N-terminus
    pfam09118
    Location:450 → 547
    DUF1929; Domain of unknown function (DUF1929)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools