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girdin (DUF630 and DUF632) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838641, updated on 18-Sep-2024

Summary

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Official Full Name
girdin (DUF630 and DUF632)
Primary source
TAIR:AT1G20530
Locus tag
AT1G20530
See related
Araport:AT1G20530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5M15.15; F5M15_15
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (7108203..7110634, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene OPC-8:0 CoA ligase1 Neighboring gene ncRNA Neighboring gene DUF241 domain protein, putative (DUF241) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene acyl activating enzyme 1 Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101903.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
girdin (DUF630 and DUF632)
NP_173477.1
  • Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1); Has 3752 Blast hits to 2914 proteins in 298 species: Archae - 59; Bacteria - 209; Metazoa - 1260; Fungi - 213; Plants - 622; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7108203..7110634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101903.2 → NP_173477.1  girdin (DUF630 and DUF632) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBG5, A0A654ECD4, Q9LMW0
    Conserved Domains (2) summary
    pfam04782
    Location:234 → 529
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 58
    DUF630; Protein of unknown function (DUF630)
Nucleotide Protein
Heading Accession and Version

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