Calcium-binding EF hand family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Calcium-binding EF hand family protein
Primary source: TAIR:AT1G21630
Locus tag: AT1G21630
See related: Araport:AT1G21630
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F8K7.4; F8K7_4
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 14

Sequence:: Chromosome: 1; NC_003070.9 (7581008..7588153)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001198127.2

Supported by ESTs:

NM_001332524.1

Supported by ESTs:

NM_001332525.1

Supported by ESTs:

NM_102012.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within pollen development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in nucleus	HDA more info	PubMed
located_in plasma membrane	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Calcium-binding EF hand family protein

NP_001185056.1

Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1).

NP_173582.2

Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1); Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101; Bacteria - 6804; Metazoa - 6519; Fungi - 2817; Plants - 623; Viruses - 89; Other Eukaryotes - 4827 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

7581008..7588153

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_102012.3 → NP_173582.2 Calcium-binding EF hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173582.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WKM1, A0A654ECX6, F4HY33

Conserved Domains (5) summary

PTZ00121
Location:579 → 899

PTZ00121; MAEBL; Provisional

smart00027
Location:416 → 509

EH; Eps15 homology domain

PHA03247
Location:94 → 426

PHA03247; large tegument protein UL36; Provisional

cd00052
Location:13 → 79

EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...

TIGR02169
Location:578 → 738

SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
NM_001332524.1 → NP_001321142.1 Calcium-binding EF hand family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AQ08, A0A654ECX6
NM_001198127.2 → NP_001185056.1 Calcium-binding EF hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185056.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654ECX6, F4HY32

Conserved Domains (4) summary

smart00027
Location:416 → 509

EH; Eps15 homology domain

cd00052
Location:13 → 79

EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...

pfam03153
Location:95 → 263

TFIIA; Transcription factor IIA, alpha/beta subunit

pfam13499
Location:17 → 71

EF-hand_7; EF-hand domain pair
NM_001332525.1 → NP_001321141.1 Calcium-binding EF hand family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8APZ6, A0A654ECX6