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BTB/POZ domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838782, updated on 18-Sep-2024

Summary

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Official Full Name
BTB/POZ domain-containing protein
Primary source
TAIR:AT1G21780
Locus tag
AT1G21780
See related
Araport:AT1G21780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8K7.22; F8K7_22
Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (7651882..7654014)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PDI-like 1-1 Neighboring gene F-box protein 7 Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene tRNA-Gln

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis. Gingerich DJ, et al. J Biol Chem, 2005 May 13. PMID 15749712
  2. Molecular and functional characterization of Arabidopsis Cullin 3A. Dieterle M, et al. Plant J, 2005 Feb. PMID 15659098
  3. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. Figueroa P, et al. Plant Cell, 2005 Apr. PMID 15772280, Free PMC Article
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084105.1
NM_102027.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Cul3-RING ubiquitin ligase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein
NP_001077574.1
  • BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
NP_173597.1
  • BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7651882..7654014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084105.1 → NP_001077574.1  BTB/POZ domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077574.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WS66, Q9XHZ8
    UniProtKB/TrEMBL
    A0A178W1G9, A0A5S9VFP9
    Conserved Domains (1) summary
    pfam00651
    Location:151 → 255
    BTB; BTB/POZ domain

  2. NM_102027.3 → NP_173597.1  BTB/POZ domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173597.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WS66, Q9XHZ8
    UniProtKB/TrEMBL
    A0A178W1G9, A0A5S9VFP9
    Conserved Domains (1) summary
    pfam00651
    Location:151 → 255
    BTB; BTB/POZ domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XHZ8.1

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