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Histone H3 K4-specific methyltransferase SET7/9 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838794, updated on 18-Sep-2024

Summary

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Official Full Name
Histone H3 K4-specific methyltransferase SET7/9 family protein
Primary source
TAIR:AT1G21920
Locus tag
AT1G21920
See related
Araport:AT1G21920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T26F17.15; T26F17_15
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (7704173..7706254, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Plant thionin family protein Neighboring gene Plant thionin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phloem Companion Cell-Specific Transcriptomic and Epigenomic Analyses Identify MRF1, a Regulator of Flowering. You Y, et al. Plant Cell, 2019 Feb. PMID 30670485, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001332532.1
NM_102040.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of long-day photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of long-day photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Histone H3 K4-specific methyltransferase SET7/9 family protein
NP_173610.1
  • Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT1G77660.1); Has 24355 Blast hits to 6247 proteins in 541 species: Archae - 0; Bacteria - 3533; Metazoa - 3700; Fungi - 215; Plants - 2241; Viruses - 0; Other Eukaryotes - 14666 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7704173..7706254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102040.3 → NP_173610.1  Histone H3 K4-specific methyltransferase SET7/9 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173610.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9VIU3, A0A654EBZ5, Q9SFE3
    Conserved Domains (1) summary
    PLN03185
    Location:169 → 348
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  2. NM_001332532.1 → NP_001323190.1  Histone H3 K4-specific methyltransferase SET7/9 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWD3
Nucleotide Protein
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