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zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838819, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger CCCH domain protein
Primary source
TAIR:AT1G22140
Locus tag
AT1G22140
See related
Araport:AT1G22140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2E2.21; F2E2_21
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (7814663..7815722, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene AGAMOUS-like 104 Neighboring gene ncRNA Neighboring gene sulfate transporter 1;3 Neighboring gene senescence-associated family protein (DUF581)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001332537.1
NM_102064.5
NM_202152.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger CCCH domain protein
NP_564158.1
  • unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_973881.2
  • unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7814663..7815722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102064.5 → NP_564158.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564158.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WNR4, A0A384L206, Q93Z58
    Conserved Domains (1) summary
    pfam16543
    Location:11 → 69
    DFRP_C; DRG Family Regulatory Proteins, Tma46

  2. NM_001332537.1 → NP_001322669.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WNR4, A0A384L206, Q93Z58
    Conserved Domains (1) summary
    pfam16543
    Location:11 → 69
    DFRP_C; DRG Family Regulatory Proteins, Tma46

  3. NM_202152.2 → NP_973881.2  zinc finger CCCH domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973881.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MR19
Nucleotide Protein
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