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Late embryogenesis abundant protein (LEA) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838866, updated on 18-Sep-2024

Summary

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Official Full Name
Late embryogenesis abundant protein (LEA) family protein
Primary source
TAIR:AT1G22600
Locus tag
AT1G22600
See related
Araport:AT1G22600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K8.5; F12K8_5
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (7987141..7989217, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene AGAMOUS-like 87 Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene Phosphoinositide phosphatase family protein Neighboring gene SSUH2-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102107.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Late embryogenesis abundant protein (LEA) family protein
NP_173674.1
  • Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, sperm cell, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 169 Blast hits to 166 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 8; Plants - 85; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7987141..7989217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102107.2 → NP_173674.1  Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173674.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6I6, A0A5S9VJJ9, A0A654EE26, Q9SKA2
    Conserved Domains (1) summary
    pfam13664
    Location:199 → 299
    DUF4149; Domain of unknown function (DUF4149)
Nucleotide Protein
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