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DNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839175, updated on 18-Sep-2024

Summary

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Official Full Name
DNA binding protein
Primary source
TAIR:AT1G26330
Locus tag
AT1G26330
See related
Araport:AT1G26330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28B23.2; F28B23_2
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (9107519..9113747)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Zinc-binding dehydrogenase family protein Neighboring gene cytochrome B5 isoform A Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001198170.1
NM_102397.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA binding protein
NP_001185099.1
  • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943).
NP_173957.2
  • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9107519..9113747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102397.3 → NP_173957.2  DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173957.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDZ7, A0A5S9VZJ2, F4IE61
    Conserved Domains (3) summary
    sd00039
    Location:864 → 926
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1094 → 1184
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl02651
    Location:70 → 134
    FYRC; F/Y rich C-terminus

  2. NM_001198170.1 → NP_001185099.1  DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185099.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDZ7, A0A5S9VZJ2, F4IE60
    Conserved Domains (3) summary
    sd00039
    Location:869 → 931
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1099 → 1189
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl02651
    Location:75 → 139
    FYRC; F/Y rich C-terminus
Nucleotide Protein
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