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CLE9 CLAVATA3/ESR-RELATED 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839200, updated on 18-Sep-2024

Summary

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Official Symbol
CLE9
Official Full Name
CLAVATA3/ESR-RELATED 9
Primary source
TAIR:AT1G26600
Locus tag
AT1G26600
See related
Araport:AT1G26600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLAVATA3/ESR-RELATED 9; T1K7.3; T1K7_3
Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.
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Genomic context

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See CLE9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9191503..9192590)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ELM2 domain protein Neighboring gene C2H2-like zinc finger protein Neighboring gene C2H2-like zinc finger protein Neighboring gene T-box transcription factor, putative (DUF863)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana. Zhang L, et al. Plant Cell Environ, 2019 Mar. PMID 30378140
  2. The CLE9/10 secretory peptide regulates stomatal and vascular development through distinct receptors. Qian P, et al. Nat Plants, 2018 Dec. PMID 30518839
  3. Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, et al. EMBO Rep, 2017 Aug. PMID 28607033, Free PMC Article
  4. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. role in stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide
    Title: CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana.
  2. The authors report that the peptide hormone CLAVATA3/ESR-RELATED 9/10 (CLE9/10) regulates two different developmental processes, stomatal lineage development and xylem development, through two distinct receptor systems in Arabidopsis thaliana.
    Title: The CLE9/10 secretory peptide regulates stomatal and vascular development through distinct receptors.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_102422.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell-cell signaling involved in cell fate commitment ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in maintenance of root meristem identity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in phloem development IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cell differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISM
Inferred from Sequence Model
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLAVATA3/ESR-RELATED 9
NP_564251.1
  • CLAVATA3/ESR-RELATED 9 (CLE9); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 10 (TAIR:AT1G69320.1); Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9191503..9192590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332720.1 → NP_001323415.1  CLAVATA3/ESR-RELATED 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX22

  2. NM_102422.3 → NP_564251.1  CLAVATA3/ESR-RELATED 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564251.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCX2, Q9FZE4
    UniProtKB/TrEMBL
    A0A178WMR4, A0A5S9W1B7, A0A654EI73
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZE4.2

Gene LinkOut

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