U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARFD1B ADP-ribosylation factor D1B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839242, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ARFD1B
Official Full Name
ADP-ribosylation factor D1B
Primary source
TAIR:AT1G02430
Locus tag
AT1G02430
See related
Araport:AT1G02430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ADP-ribosylation factor D1B; ATARFD1B; T6A9.12; T6A9_12
Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ARFD1B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (495050..496332, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene proline-rich family protein Neighboring gene cytochrome c oxidase assembly protein CtaG / Cox11 family Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ADP-ribosylation factor D1A Neighboring gene NIM1-interacting 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. ADP-ribosylation factor D1 modulates Golgi morphology, cell plate formation, and plant growth in Arabidopsis. Niu F, et al. Plant Physiol, 2022 Sep 28. PMID 35876822, Free PMC Article
  2. Analysis of the small GTPase gene superfamily of Arabidopsis. Vernoud V, et al. Plant Physiol, 2003 Mar. PMID 12644670, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ADP-ribosylation factor D1 modulates Golgi morphology, cell plate formation, and plant growth in Arabidopsis.
    Title: ADP-ribosylation factor D1 modulates Golgi morphology, cell plate formation, and plant growth in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_001331338.1
NM_100124.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ADP-ribosylation factor D1B
NP_171745.3
  • ADP-ribosylation factor D1B (ARFD1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1A (TAIR:AT1G02440.1); Has 8851 Blast hits to 8846 proteins in 396 species: Archae - 6; Bacteria - 6; Metazoa - 3723; Fungi - 1395; Plants - 1867; Viruses - 3; Other Eukaryotes - 1851 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    495050..496332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100124.5 → NP_171745.3  ADP-ribosylation factor D1B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171745.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9S764, A0A654E654, F4HXI4
    Conserved Domains (1) summary
    cd00878
    Location:19 → 186
    Arf_Arl; ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

  2. NM_001331338.1 → NP_001321619.1  ADP-ribosylation factor D1B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARH7, A0A5S9S764, A0A654E654
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.