U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839328, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
F-box/RNI-like/FBD-like domains-containing protein
Primary source
TAIR:AT1G05080
Locus tag
AT1G05080
See related
Araport:AT1G05080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7A14.5; T7A14_5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1459091..1460579)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene CLAVATA3/ESR-RELATED 20 Neighboring gene transmembrane protein, putative (DUF1068) Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
F-box/RNI-like/FBD-like domains-containing protein
NP_172001.1
  • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G44850.1); Has 1798 Blast hits to 1750 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1459091..1460579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100387.1 → NP_172001.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172001.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I791, Q9ZVP2
    UniProtKB/TrEMBL
    A0A5S9SP42
    Conserved Domains (3) summary
    smart00579
    Location:369 → 439
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:142 → 163
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:163 → 188
    LRR_2; Leucine Rich Repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVP2.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools