lipid-binding serum glycoprotein family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: lipid-binding serum glycoprotein family protein
Primary source: TAIR:AT1G04970
Locus tag: AT1G04970
See related: Araport:AT1G04970
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F13M7.4; F13M7_4
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (1411088..1413627)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Results demonstrate the biological importance of LBRs for induction of LPS-triggered defence responses in plants and the functional similarities among LBP/BPI subfamily from various organisms. [LBR-1]
Title: Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001331507.1

Supported by ESTs:

NM_100375.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables lipid binding	IEA Inferred from Electronic Annotation more info
enables lipopolysaccharide binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within reactive oxygen species biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of gene expression	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info
located_in plant-type vacuole	HDA more info	PubMed

General protein information

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Preferred Names: lipid-binding serum glycoprotein family protein

NP_001318922.1

lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 420 Blast hits to 417 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NP_563724.1

lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 476 Blast hits to 472 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

1411088..1413627

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_179262.2 → NP_849593.2 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDD6, A0A384KL15, F4I775
NM_100375.4 → NP_563724.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_563724.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LAL8, Q9MAU5

UniProtKB/TrEMBL

A0A5S9SNH3, A0A654E723

Conserved Domains (2) summary

cd00025
Location:28 → 254

BPI1; BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...

cd00026
Location:281 → 476

BPI2; BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer ...
NM_001331507.1 → NP_001318922.1 lipid-binding serum glycoprotein family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDD6, A0A384KL15, F4I775