RING/U-box superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: RING/U-box superfamily protein
Primary source: TAIR:AT1G01670
Locus tag: AT1G01670
See related: Araport:AT1G01670
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T1N6.28; T1N6_28
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 9

Sequence:: Chromosome: 1; NC_003070.9 (242713..246054, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001331289.1

Supported by ESTs:

NM_001331290.1

Supported by ESTs:

NM_100049.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RING/U-box superfamily protein

NP_171673.2

RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4; Bacteria - 101; Metazoa - 863; Fungi - 177; Plants - 1725; Viruses - 10; Other Eukaryotes - 977 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

242713..246054 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100049.4 → NP_171673.2 RING/U-box superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_171673.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GXQ7

UniProtKB/TrEMBL

A0A5S9S433, A0A654E816

Conserved Domains (3) summary

cd16655
Location:298 → 339

RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins

pfam17380
Location:164 → 281

DUF5401; Family of unknown function (DUF5401)

cl00292
Location:1 → 112

AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
NM_001331289.1 → NP_001321953.1 RING/U-box superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GXQ7

UniProtKB/TrEMBL

A0A5S9S433, A0A654E816

Conserved Domains (3) summary

cd16655
Location:298 → 339

RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins

pfam17380
Location:164 → 281

DUF5401; Family of unknown function (DUF5401)

cl00292
Location:1 → 112

AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
NM_001331290.1 → NP_001321954.1 RING/U-box superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ASI2