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26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839409, updated on 18-Sep-2024

Summary

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Official Full Name
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Primary source
TAIR:AT1G04810
Locus tag
AT1G04810
See related
Araport:AT1G04810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M7.20; F13M7_20
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (1350080..1355466)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene RING/U-box superfamily protein Neighboring gene glycine-rich protein Neighboring gene tubulin alpha-4 chain Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Glickman MH, et al. Cell, 1998 Sep 4. PMID 9741626
  2. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. Fu H, et al. EMBO J, 2001 Dec 17. PMID 11742986, Free PMC Article
  3. Structure and functional analysis of the 26S proteasome subunits from plants. Fu H, et al. Mol Biol Rep, 1999 Apr. PMID 10363660
  4. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. Book AJ, et al. J Biol Chem, 2010 Aug 13. PMID 20516081, Free PMC Article
  5. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_100359.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region HDA PubMed 
located_in nucleus TAS
Traceable Author Statement
more info
 PubMed 
part_of proteasome complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
NP_171973.1
  • 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1350080..1355466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100359.3 → NP_171973.1  26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171973.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6XBM5, Q9MAT0
    UniProtKB/TrEMBL
    A0A178WEG0, A0A5S9SMG8
    Conserved Domains (2) summary
    COG5116
    Location:6 → 953
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:574 → 598
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MAT0.1

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