U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LIP2 lipoyltransferase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839462, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LIP2
Official Full Name
lipoyltransferase 2
Primary source
TAIR:AT1G04640
Locus tag
AT1G04640
See related
Araport:AT1G04640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
lipoyltransferase 2
Summary
Lipoyltransferase, located in mitochondria but not found in chloroplasts
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LIP2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (1292023..1293398)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene GRIM-19 protein Neighboring gene ribonuclease P family protein / Rpp14 family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene holliday junction resolvase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Lipoic acid metabolism in Arabidopsis thaliana: cloning and characterization of a cDNA encoding lipoyltransferase. Wada M, et al. Plant Cell Physiol, 2001 Jun. PMID 11427685
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

NM_001035884.2
NM_100343.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipoyl(octanoyl) transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables lipoyltransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lipoate metabolic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein lipoylation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in extracellular region HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lipoyltransferase 2
NP_001030961.1
  • lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_171958.1
  • lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17; Bacteria - 3180; Metazoa - 102; Fungi - 137; Plants - 98; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1292023..1293398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100343.3 → NP_171958.1  lipoyltransferase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171958.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23021, Q9SXP7
    UniProtKB/TrEMBL
    A0A178WI01, A0A5S9SKC3
    Conserved Domains (1) summary
    cd16444
    Location:8 → 214
    LipB; lipoyl/octanoyl transferase

  2. NM_001035884.2 → NP_001030961.1  lipoyltransferase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030961.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23021, Q9SXP7
    UniProtKB/TrEMBL
    A0A178WI01, A0A5S9SKC3
    Conserved Domains (1) summary
    cd16444
    Location:8 → 214
    LipB; lipoyl/octanoyl transferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SXP7.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools