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CSLD5 cellulose synthase-like D5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839467, updated on 18-Sep-2024

Summary

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Official Symbol
CSLD5
Official Full Name
cellulose synthase-like D5
Primary source
TAIR:AT1G02730
Locus tag
AT1G02730
See related
Araport:AT1G02730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCSLD5; CELLULOSE SYNTHASE LIKE D5; cellulose synthase-like D5; SALT OVERLY SENSITIVE 6; SOS6; T14P4.29
Summary
Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.
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Genomic context

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See CSLD5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (594502..598657, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein Neighboring gene galacturonosyltransferase 5 Neighboring gene MRG family protein Neighboring gene Drought-responsive family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis CSLD5 Functions in Cell Plate Formation in a Cell Cycle-Dependent Manner. Gu F, et al. Plant Cell, 2016 Jul. PMID 27354558, Free PMC Article
  2. A cellulose synthase-like protein is required for osmotic stress tolerance in Arabidopsis. Zhu J, et al. Plant J, 2010 Jul 1. PMID 20409003, Free PMC Article
  3. Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis. Bernal AJ, et al. Plant J, 2007 Dec. PMID 17892446
  4. Mannan synthase activity in the CSLD family. Verhertbruggen Y, et al. Plant Signal Behav, 2011 Oct. PMID 21904114, Free PMC Article
  5. The cooperative activities of CSLD2, CSLD3, and CSLD5 are required for normal Arabidopsis development. Yin L, et al. Mol Plant, 2011 Nov. PMID 21471331

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that CSLD5 is an unstable protein that is rapidly degraded upon completion of cell division and that the protein turnover characteristics of CSLD5 are altered in ccs52a2 mutants, indicating that CSLD5 turnover may be regulated by a cell cycle-associated E3-ubiquitin ligase, the anaphase-promoting complex.
    Title: Arabidopsis CSLD5 Functions in Cell Plate Formation in a Cell Cycle-Dependent Manner.
  2. the cooperative activities of CSLD2, CSLD3, and CSLD5 are required for normal Arabidopsis development
    Title: The cooperative activities of CSLD2, CSLD3, and CSLD5 are required for normal Arabidopsis development.
  3. AtCSLD5 is not required for normal plant growth and development but has a critical role in osmotic stress tolerance.
    Title: A cellulose synthase-like protein is required for osmotic stress tolerance in Arabidopsis.
  4. Disruption of ATCSLD5 reduces xylan and homogalacturonan synthase activity and results in reduced growth.
    Title: Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_100153.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
  
enables glucosyltransferase activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables mannan synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell plate assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell wall biogenesis NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within shoot system development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cellulose synthase-like D5
NP_171773.1
  • cellulose synthase-like D5 (CSLD5); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13; Bacteria - 1269; Metazoa - 102; Fungi - 19; Plants - 1879; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    594502..598657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100153.4 → NP_171773.1  cellulose synthase-like D5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171773.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRW9
    UniProtKB/TrEMBL
    A0A178W647, A0A384L2H6, A0A5S9S9I0, W8QPC8
    Conserved Domains (1) summary
    PLN02248
    Location:3 → 1181
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRW9.1

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