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RIC2 ROP-interactive CRIB motif-containing protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839627, updated on 18-Sep-2024

Summary

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Official Symbol
RIC2
Official Full Name
ROP-interactive CRIB motif-containing protein 2
Primary source
TAIR:AT1G27380
Locus tag
AT1G27380
See related
Araport:AT1G27380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17L21.16; F17L21_16; ROP-interactive CRIB motif-containing protein 2
Summary
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.
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Genomic context

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See RIC2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (9508680..9510269, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene squamosa promoter-like 11 Neighboring gene squamosa promoter binding protein-like 10 Neighboring gene phosphoribosylformylglycinamidine synthase Neighboring gene translocase outer membrane 20-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide analysis of Arabidopsis Rop-interactive CRIB motif-containing proteins that act as Rop GTPase targets. Wu G, et al. Plant Cell, 2001 Dec. PMID 11752391, Free PMC Article
  2. An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. Oikawa A, et al. PLoS One, 2010 Nov 23. PMID 21124849, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102500.3
NM_179382.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ROP-interactive CRIB motif-containing protein 2
NP_564281.2
  • ROP-interactive CRIB motif-containing protein 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 111 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_849713.1
  • ROP-interactive CRIB motif-containing protein 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 111 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9508680..9510269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332758.1 → NP_001321074.1  ROP-interactive CRIB motif-containing protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAB0, A0A1P8APS5, A0A384KSI6, A0A654EDB8
    Conserved Domains (1) summary
    smart00285
    Location:127 → 162
    PBD; P21-Rho-binding domain

  2. NM_001332757.1 → NP_001321075.1  ROP-interactive CRIB motif-containing protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APT1

  3. NM_102500.3 → NP_564281.2  ROP-interactive CRIB motif-containing protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564281.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYU0, Q8VWR4, Q9FZJ8
    UniProtKB/TrEMBL
    A0A178WC56
    Conserved Domains (1) summary
    smart00285
    Location:71 → 106
    PBD; P21-Rho-binding domain

  4. NM_179382.1 → NP_849713.1  ROP-interactive CRIB motif-containing protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849713.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYU0, Q8VWR4, Q9FZJ8
    UniProtKB/TrEMBL
    A0A178WC56
    Conserved Domains (1) summary
    smart00285
    Location:71 → 106
    PBD; P21-Rho-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYU0.1

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