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ubiquitin-fold modifier-conjugating enzyme [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839644, updated on 18-Sep-2024

Summary

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Official Full Name
ubiquitin-fold modifier-conjugating enzyme
Primary source
TAIR:AT1G27530
Locus tag
AT1G27530
See related
Araport:AT1G27530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T17H3.3; T17H3_3
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (9562487..9564031, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UvrB/UvrC domain protein (DUF3506) Neighboring gene Glycosyl hydrolase family 47 protein Neighboring gene phosphatidylinositol 3/4-kinase Neighboring gene F-box protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102517.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables UFM1 conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ufmylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin-fold modifier-conjugating enzyme
NP_564289.1
  • CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9562487..9564031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102517.5 → NP_564289.1  ubiquitin-fold modifier-conjugating enzyme [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564289.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H0X8, Q9SXC8
    UniProtKB/TrEMBL
    A0A178WMM0, A0A5S9W382, A0A654EE87
    Conserved Domains (1) summary
    pfam08694
    Location:8 → 163
    UFC1; Ubiquitin-fold modifier-conjugating enzyme 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SXC8.1

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