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symplekin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839651, updated on 18-Sep-2024

Summary

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Official Full Name
symplekin
Primary source
TAIR:AT1G27595
Locus tag
AT1G27595
See related
Araport:AT1G27595
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22C5.3
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Genomic context

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Location:
chromosome: 1
Exon count:
27
Sequence:
Chromosome: 1; NC_003070.9 (9592088..9602917)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3- and 4-kinase family protein Neighboring gene ncRNA Neighboring gene F-box protein (DUF295) Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TANG1, Encoding a Symplekin_C Domain-Contained Protein, Influences Sugar Responses in Arabidopsis. Zheng L, et al. Plant Physiol, 2015 Jul. PMID 26002908, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TANG1, a unique gene, plays an important role in sugar responses in Arabidopsis.[TANG1]
    Title: TANG1, Encoding a Symplekin_C Domain-Contained Protein, Influences Sugar Responses in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

NM_001332770.1
NM_102523.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to glucose stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
symplekin
NP_001319093.1
  • CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9592088..9602917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332770.1 → NP_001319093.1  symplekin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9W5L4, A0A654EEW7, F4HSZ1
    Conserved Domains (2) summary
    pfam11935
    Location:100 → 314
    DUF3453; Domain of unknown function (DUF3453)
    pfam12295
    Location:1091 → 1270
    Symplekin_C; Symplekin tight junction protein C terminal

  2. NM_102523.3 → NP_174079.2  symplekin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174079.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL07, Q6NPW5
    Conserved Domains (1) summary
    pfam11935
    Location:99 → 243
    DUF3453; Domain of unknown function (DUF3453)
Nucleotide Protein
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