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basic helix-loop-helix (bHLH) DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839658, updated on 18-Sep-2024

Summary

Official Full Name
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Primary source
TAIR:AT1G27660
Locus tag
AT1G27660
See related
Araport:AT1G27660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22C5.11; T22C5_11
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Genomic context

Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (9621398..9626067)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cyclin T 1;3 Neighboring gene uncharacterized protein Neighboring gene U2 snRNP auxiliary factor small subunit Neighboring gene uncharacterized protein Neighboring gene miscRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_102531.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NP_174087.1
  • basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.3); Has 1680 Blast hits to 1555 proteins in 71 species: Archae - 0; Bacteria - 6; Metazoa - 95; Fungi - 29; Plants - 1158; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9621398..9626067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102531.4NP_174087.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174087.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFZ3
    UniProtKB/TrEMBL
    A0A178WNA0, A0A7G2DZT4
    Conserved Domains (1) summary
    cd11393
    Location:329379
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins