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PUB45 plant U-box 45 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839684, updated on 18-Sep-2024

Summary

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Official Symbol
PUB45
Official Full Name
plant U-box 45
Primary source
TAIR:AT1G27910
Locus tag
AT1G27910
See related
Araport:AT1G27910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA PLANT U-BOX 45; ATPUB45; F13K9.2; F13K9_2; plant U-box 45
Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
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Genomic context

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See PUB45 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9720733..9724800, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DEAD/DEAH box RNA helicase family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene RNA helicase family protein Neighboring gene ncRNA Neighboring gene microtubule-associated protein 65-8 Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Mudgil Y, et al. Plant Physiol, 2004 Jan. PMID 14657406, Free PMC Article
  2. Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Samuel MA, et al. Plant Physiol, 2008 Aug. PMID 18552232, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102556.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transmembrane receptor protein serine/threonine kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant U-box 45
NP_174112.1
  • plant U-box 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 2726 Blast hits to 2661 proteins in 214 species: Archae - 0; Bacteria - 25; Metazoa - 192; Fungi - 159; Plants - 2120; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9720733..9724800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102556.5 → NP_174112.1  plant U-box 45 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174112.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WLV7, Q9C7G1
    UniProtKB/TrEMBL
    A0A5S9W6U1, A0A654EF57, A0A7G2DYI0
    Conserved Domains (3) summary
    smart00504
    Location:282 → 345
    Ubox; Modified RING finger domain
    PLN03200
    Location:638 → 700
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:415 → 449
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7G1.1

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