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senescence regulator (Protein of unknown function, DUF584) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839841, updated on 18-Sep-2024

Summary

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Official Full Name
senescence regulator (Protein of unknown function, DUF584)
Primary source
TAIR:AT1G29640
Locus tag
AT1G29640
See related
Araport:AT1G29640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15D2.20; F15D2_20
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (10355638..10356482, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cytochrome C oxidase polypeptide VIB family protein Neighboring gene 5'-3' exonuclease family protein Neighboring gene pseudo Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtS40-1, a group I DUF584 protein positively regulates ABA response and salt tolerance in Arabidopsis. Wang Y, et al. Gene, 2022 Dec 20. PMID 36044943
  2. Nuclear targeted AtS40 modulates senescence associated gene expression in Arabidopsis thaliana during natural development and in darkness. Fischer-Kilbienski I, et al. Plant Mol Biol, 2010 Jul. PMID 20238146
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102704.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in leaf senescence IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to absence of light IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
senescence regulator (Protein of unknown function, DUF584)
NP_174257.1
  • Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT2G34340.1); Has 324 Blast hits to 324 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 324; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10355638..10356482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102704.3 → NP_174257.1  senescence regulator (Protein of unknown function, DUF584) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174257.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C7N7
    UniProtKB/TrEMBL
    A0A178WCZ2
    Conserved Domains (1) summary
    pfam04520
    Location:3 → 139
    Senescence_reg; Senescence regulator
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7N7.1

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