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Leucine-rich repeat transmembrane protein kinase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839851, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat transmembrane protein kinase
Primary source
TAIR:AT1G29730
Locus tag
AT1G29730
See related
Araport:AT1G29730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3M22.3
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (10400564..10405913, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene receptor-like kinase in flowers 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332870.1
NM_001332871.1
NM_102713.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat transmembrane protein kinase
NP_174266.2
  • Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 190606 Blast hits to 135535 proteins in 4784 species: Archae - 125; Bacteria - 16883; Metazoa - 53128; Fungi - 11226; Plants - 86237; Viruses - 443; Other Eukaryotes - 22564 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10400564..10405913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332869.1 → NP_001322634.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUL5, A0A5S9WBR2

  2. NM_102713.4 → NP_174266.2  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174266.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I336, Q9C6G4
    Conserved Domains (5) summary
    smart00221
    Location:643 → 911
    STYKc; Protein kinase; unclassified specificity
    COG4886
    Location:124 → 370
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14066
    Location:646 → 913
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:124 → 147
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:411 → 598
    Malectin; Di-glucose binding within endoplasmic reticulum

  3. NM_001332870.1 → NP_001322633.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUP1, A0A5S9WBR2, A0A654EDX3

  4. NM_001332871.1 → NP_001322635.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUL0, A0A5S9WBR2, A0A654EDX3
Nucleotide Protein
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