U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Leucine-rich repeat transmembrane protein kinase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839852, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Leucine-rich repeat transmembrane protein kinase
Primary source
TAIR:AT1G29740
Locus tag
AT1G29740
See related
Araport:AT1G29740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N18.20; F1N18_20
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (10407220..10413119, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene receptor-like kinase in flowers 1 Neighboring gene Putative adipose-regulatory protein (Seipin) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_102714.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Leucine-rich repeat transmembrane protein kinase
NP_174267.4
  • Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29730.1); Has 190225 Blast hits to 137512 proteins in 4788 species: Archae - 130; Bacteria - 17262; Metazoa - 52758; Fungi - 10942; Plants - 86262; Viruses - 458; Other Eukaryotes - 22413 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10407220..10413119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332872.1 → NP_001320665.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WI07, A0A1P8ANH9

  2. NM_102714.5 → NP_174267.4  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174267.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I337, Q9C6G5
    Conserved Domains (4) summary
    PLN00113
    Location:95 → 947
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd14066
    Location:683 → 947
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:124 → 147
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:411 → 598
    Malectin; Di-glucose binding within endoplasmic reticulum
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.