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ECS1 ECS1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840047, updated on 18-Sep-2024

Summary

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Official Symbol
ECS1
Official Full Name
ECS1
Primary source
TAIR:AT1G31580
Locus tag
AT1G31580
See related
Araport:AT1G31580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CXC750; F27M3.20; F27M3_20
Summary
Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.
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Genomic context

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See ECS1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (11310997..11311989)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ECS1 gene of Arabidopsis encodes a plant cell wall-associated protein and is potentially linked to a locus influencing resistance to Xanthomonas campestris. Aufsatz W, et al. Plant Mol Biol, 1998 Dec. PMID 9869403
  2. A new, pathogen-inducible gene of Arabidopsis is expressed in an ecotype-specific manner. Aufsatz W, et al. Plant Mol Biol, 1994 May. PMID 8018872
  3. Fertilized egg cells secrete endopeptidases to avoid polytubey. Yu X, et al. Nature, 2021 Apr. PMID 33790463
  4. Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development. Hu W, et al. Plant J, 2006 Feb. PMID 16412086
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Fertilized egg cells secrete endopeptidases to avoid polytubey.
    Title: Fertilized egg cells secrete endopeptidases to avoid polytubey.
Submit: New GeneRIF Correction

General gene information

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NM_102895.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response IEP
Inferred from Expression Pattern
more info
 PubMed 
NOT involved_in defense response to bacterium IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ECS1
NP_174441.1
  • ECS1; Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11310997..11311989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102895.4 → NP_174441.1  ECS1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174441.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39066
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39066.1

Gene LinkOut

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