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MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840207, updated on 18-Sep-2024

Summary

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Official Full Name
MATE efflux family protein
Primary source
TAIR:AT1G33110
Locus tag
AT1G33110
See related
Araport:AT1G33110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9L6.1; T9L6_1
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (12004854..12008852)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene Ribosomal protein L6 family Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036056.1
NM_103045.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
MATE efflux family protein
NP_001031133.1
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_174587.1
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33100.1); Has 9952 Blast hits to 9876 proteins in 1988 species: Archae - 205; Bacteria - 7065; Metazoa - 140; Fungi - 326; Plants - 1371; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12004854..12008852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103045.6 → NP_174587.1  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174587.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W488, Q9LP32
    UniProtKB/TrEMBL
    A0A178WPH4, A0A5S9WN97, A0A654EGJ5
    Conserved Domains (2) summary
    COG0534
    Location:29 → 465
    NorM; Na+-driven multidrug efflux pump [Defense mechanisms]
    cd13132
    Location:36 → 470
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

  2. NM_001036056.1 → NP_001031133.1  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031133.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WN97, A0A654EGJ5, F4HPH5
    Conserved Domains (2) summary
    cd13132
    Location:36 → 400
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
    TIGR00797
    Location:46 → 386
    matE; putative efflux protein, MATE family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W488.1

Gene LinkOut

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