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translation initiation factor 3 (IF-3) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840338, updated on 18-Sep-2024

Summary

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Official Full Name
translation initiation factor 3 (IF-3) family protein
Primary source
TAIR:AT1G34360
Locus tag
AT1G34360
See related
Araport:AT1G34360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7P12.8; F7P12_8
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (12542796..12546244)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tmem18 Neighboring gene forkhead-associated (FHA) domain-containing protein Neighboring gene ncRNA Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene 5'-3' exonuclease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Translation initiation factor 3 families: what are their roles in regulating cyanobacterial and chloroplast gene expression? Nesbit AD, et al. Photosynth Res, 2015 Oct. PMID 25630975
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333099.1
NM_001333100.1
NM_103159.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
translation initiation factor 3 (IF-3) family protein
NP_174696.2
  • translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 45300 Blast hits to 30219 proteins in 3054 species: Archae - 48; Bacteria - 10638; Metazoa - 13046; Fungi - 7368; Plants - 4879; Viruses - 1090; Other Eukaryotes - 8231 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12542796..12546244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103159.4 → NP_174696.2  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174696.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NLP2, Q9C8N4
    UniProtKB/TrEMBL
    A0A654EKE5
    Conserved Domains (2) summary
    cl25764
    Location:332 → 467
    PAT1; Topoisomerase II-associated protein PAT1
    cl27649
    Location:81 → 199
    IF3_C; Translation initiation factor IF-3, C-terminal domain

  2. NM_001333099.1 → NP_001322462.1  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU34, A0A654EKE5

  3. NM_001333100.1 → NP_001322463.1  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU23, A0A654EKE5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NLP2.1

Gene LinkOut

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