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leucine-rich repeat transmembrane protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840345, updated on 18-Sep-2024

Summary

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Official Full Name
leucine-rich repeat transmembrane protein kinase family protein
Primary source
TAIR:AT1G34420
Locus tag
AT1G34420
See related
Araport:AT1G34420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K21.25; F12K21_25
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (12584345..12587778)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene auxin response factor 21 Neighboring gene ncRNA Neighboring gene 2-oxoacid dehydrogenases acyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene CYCLIN B1;5 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103165.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
leucine-rich repeat transmembrane protein kinase family protein
NP_174702.1
  • leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G41820.1); Has 146592 Blast hits to 61165 proteins in 1949 species: Archae - 41; Bacteria - 12464; Metazoa - 44749; Fungi - 1974; Plants - 76166; Viruses - 76; Other Eukaryotes - 11122 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12584345..12587778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103165.2 → NP_174702.1  leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174702.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEE3, A0A7G2DXY9, Q9LNK3
    Conserved Domains (3) summary
    PLN00113
    Location:12 → 963
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd14066
    Location:694 → 966
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:345 → 369
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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