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Endoplasmic reticulum vesicle transporter protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840509, updated on 18-Sep-2024

Summary

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Official Full Name
Endoplasmic reticulum vesicle transporter protein
Primary source
TAIR:AT1G36050
Locus tag
AT1G36050
See related
Araport:AT1G36050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5J5.4; F5J5_4
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (13450089..13453683)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001160922.2
NM_103301.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
Endoplasmic reticulum vesicle transporter protein
NP_001154394.1
  • Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1261 Blast hits to 1092 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 439; Fungi - 275; Plants - 277; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
NP_564467.5
  • Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1210 Blast hits to 1080 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 262; Plants - 277; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    13450089..13453683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160922.2 → NP_001154394.1  Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154394.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9L7, A0A654EFI3, Q9C8W1
    Conserved Domains (2) summary
    pfam07970
    Location:149 → 366
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:8 → 98
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

  2. NM_103301.6 → NP_564467.5  Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564467.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DY72, F4I1K2
    Conserved Domains (2) summary
    pfam07970
    Location:149 → 366
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:8 → 98
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
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