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hAT transposon superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840927, updated on 18-Sep-2024

Summary

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Official Full Name
hAT transposon superfamily protein
Primary source
TAIR:AT1G43260
Locus tag
AT1G43260
See related
Araport:AT1G43260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1I21.5; F1I21_5
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (16318253..16319234)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SET domain-containing protein Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103475.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hAT transposon superfamily protein
NP_175015.1
  • hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16318253..16319234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103475.1 → NP_175015.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175015.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WP73, A0A654ERM1, F4IB51
    Conserved Domains (1) summary
    pfam04937
    Location:75 → 226
    DUF659; Protein of unknown function (DUF 659)
Nucleotide Protein
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