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ty2 thioredoxin Y2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840939, updated on 18-Sep-2024

Summary

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Official Symbol
ty2
Official Full Name
thioredoxin Y2
Primary source
TAIR:AT1G43560
Locus tag
AT1G43560
See related
Araport:AT1G43560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT1G43565; Aty2; T10P12.4; T10P12_4; thioredoxin Y2
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Genomic context

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See ty2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (16397979..16399880, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of thioredoxin y2 in the preservation of leaf methionine sulfoxide reductase capacity and growth under high light. Laugier E, et al. Plant Cell Environ, 2013 Mar. PMID 22943306
  2. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation. Née G, et al. Int J Mol Sci, 2021 Sep 27. PMID 34638735, Free PMC Article
  3. Lon domain-containing protein 1 represses thioredoxin y2 and regulates ROS levels in Arabidopsis chloroplasts. Shin JS, et al. FEBS Lett, 2020 Mar. PMID 31701529
  4. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Collin V, et al. Plant Physiol, 2004 Dec. PMID 15531707, Free PMC Article
  5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
    Title: A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
  2. plays a physiological function in protein repair mechanisms as an electron donor to plastidial methionine sulfoxide reductases in photosynthetic organs
    Title: Involvement of thioredoxin y2 in the preservation of leaf methionine sulfoxide reductase capacity and growth under high light.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_103481.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein-disulfide reductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of catalytic activity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
thioredoxin Y2
NP_175021.2
  • thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16397979..16399880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103481.4 → NP_175021.2  thioredoxin Y2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175021.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7S9, Q9XIG4
    UniProtKB/TrEMBL
    A0A178WFY2, A0A5S9WJA6, A0A654EFV3
    Conserved Domains (1) summary
    cl00388
    Location:64 → 163
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7S9.1

Gene LinkOut

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