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Cyclophilin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841030, updated on 18-Sep-2024

Summary

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Official Full Name
Cyclophilin
Primary source
TAIR:AT1G44478
Locus tag
AT1G44478
See related
Araport:AT1G44478
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18F15.6; T18F15_6
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (16852341..16853238, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene zinc-ribbon domain protein Neighboring gene Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein Neighboring gene pseudo Neighboring gene Cyclase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103549.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclophilin
NP_175089.1
  • Cyclophilin; BEST Arabidopsis thaliana protein match is: cyclophilin 59 (TAIR:AT1G53720.1); Has 400 Blast hits to 376 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 13; Plants - 87; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16852341..16853238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103549.1 → NP_175089.1  Cyclophilin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175089.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EL72, Q94LA7
    Conserved Domains (1) summary
    cl00197
    Location:14 → 61
    cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
Nucleotide Protein
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