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SBP1 S-ribonuclease binding protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841106, updated on 18-Sep-2024

Summary

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Official Symbol
SBP1
Official Full Name
S-ribonuclease binding protein 1
Primary source
TAIR:AT1G45976
Locus tag
AT1G45976
See related
Araport:AT1G45976
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G19.22; F2G19_22; S-ribonuclease binding protein 1
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Genomic context

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See SBP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (17199314..17200841)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103601.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
S-ribonuclease binding protein 1
NP_175141.1
  • S-ribonuclease binding protein 1 (SBP1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1148 Blast hits to 1148 proteins in 158 species: Archae - 2; Bacteria - 4; Metazoa - 532; Fungi - 2; Plants - 446; Viruses - 53; Other Eukaryotes - 109 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17199314..17200841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103601.3 → NP_175141.1  S-ribonuclease binding protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175141.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WK23, A0A5S9WMP4, Q9FEA0
    Conserved Domains (3) summary
    cd00162
    Location:279 → 313
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam13920
    Location:277 → 315
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    cl21462
    Location:186 → 219
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
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