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SEC3B exocyst complex component sec3B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841165, updated on 18-Sep-2024

Summary

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Official Symbol
SEC3B
Official Full Name
exocyst complex component sec3B
Primary source
TAIR:AT1G47560
Locus tag
AT1G47560
See related
Araport:AT1G47560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
exocyst complex component sec3B; F16N3.16; F16N3_16
Summary
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
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Genomic context

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See SEC3B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (17466535..17473421)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Scorpion toxin-like knottin superfamily protein Neighboring gene exocyst complex component sec3A Neighboring gene pseudo Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis. Safavian D, et al. Plant Physiol, 2015 Dec. PMID 26443677, Free PMC Article
  2. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377
  3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103649.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within acceptance of pollen IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
exocyst complex component sec3B
NP_175187.3
  • exocyst complex component sec3B (SEC3B); CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3A (TAIR:AT1G47550.1); Has 437 Blast hits to 422 proteins in 153 species: Archae - 2; Bacteria - 6; Metazoa - 176; Fungi - 108; Plants - 103; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17466535..17473421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103649.4 → NP_175187.3  exocyst complex component sec3B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175187.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SX86
    UniProtKB/TrEMBL
    A0A5S9WMR8, A0A654EGB9
    Conserved Domains (2) summary
    pfam15277
    Location:52 → 144
    Sec3-PIP2_bind; Exocyst complex component SEC3 N-terminal PIP2 binding PH
    cl19950
    Location:223 → 870
    Sec3_C; Exocyst complex component Sec3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SX86.1

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