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EMB1144 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841307, updated on 18-Sep-2024

Summary

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Official Symbol
EMB1144
Official Full Name
chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase
Primary source
TAIR:AT1G48850
Locus tag
AT1G48850
See related
Araport:AT1G48850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1144; T24P22.3; T24P22_3
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Genomic context

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See EMB1144 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (18064905..18068154, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene Ribosomal protein S7e family protein Neighboring gene heat-inducible transcription repressor (DUF639) Neighboring gene RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and analysis of a cDNA coding for chorismate synthase from the higher plant Corydalis sempervirens Pers. Schaller A, et al. J Biol Chem, 1991 Nov 15. PMID 1718979
  2. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036080.2
NM_001036081.2
NM_103779.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chorismate synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within aromatic amino acid family biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
involved_in chorismate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in nucleolus HDA PubMed 
located_in nucleus HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase
NP_001031157.1
  • embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase, conserved site (InterPro:IPR020541), Chorismate synthase (InterPro:IPR000453); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001031158.1
  • embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase, conserved site (InterPro:IPR020541), Chorismate synthase (InterPro:IPR000453); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564534.1
  • embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase, conserved site (InterPro:IPR020541), Chorismate synthase (InterPro:IPR000453); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 9240 Blast hits to 9209 proteins in 2569 species: Archae - 213; Bacteria - 5247; Metazoa - 6; Fungi - 152; Plants - 112; Viruses - 0; Other Eukaryotes - 3510 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18064905..18068154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103779.5 → NP_564534.1  chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564534.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P57720, Q570J9, Q93ZI3
    UniProtKB/TrEMBL
    A0A178W8K1, A0A654EIG7, Q0WUP7
    Conserved Domains (1) summary
    PLN02754
    Location:27 → 435
    PLN02754; chorismate synthase

  2. NM_001036080.2 → NP_001031157.1  chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031157.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8K1, F4I032
    Conserved Domains (1) summary
    PLN02754
    Location:27 → 372
    PLN02754; chorismate synthase

  3. NM_001036081.2 → NP_001031158.1  chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031158.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8K1, F4I033
    Conserved Domains (1) summary
    PLN02754
    Location:27 → 372
    PLN02754; chorismate synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P57720.2

Gene LinkOut

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