U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841402, updated on 18-Sep-2024

Summary

Official Full Name
F-box associated ubiquitination effector family protein
Primary source
TAIR:AT1G49790
Locus tag
AT1G49790
See related
Araport:AT1G49790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10F5.4; F10F5_4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (18435351..18437131, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plant U-box 26 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Na+/H+ antiporter 2

General gene information

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
F-box associated ubiquitination effector family protein
NP_001154414.1
  • F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G43260.1); Has 397 Blast hits to 396 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_175401.1
  • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G43260.1); Has 394 Blast hits to 393 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18435351..18437131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160942.1NP_001154414.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E127, F4I3E1
    Conserved Domains (1) summary
    TIGR01640
    Location:50243
    F_box_assoc_1; F-box protein interaction domain
  2. NM_103866.2NP_175401.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175401.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E127, Q9C6D5
    Conserved Domains (1) summary
    TIGR01640
    Location:50243
    F_box_assoc_1; F-box protein interaction domain