U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MuDR family transposase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841415, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
MuDR family transposase
Primary source
TAIR:AT1G49920
Locus tag
AT1G49920
See related
Araport:AT1G49920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18C15.1; T18C15_1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (18481584..18484393, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene C2H2 type zinc finger transcription factor family Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene alanine-tRNA ligase Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001333404.1
NM_103879.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
MuDR family transposase
NP_001319184.1
  • MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64260.1); Has 26408 Blast hits to 9010 proteins in 522 species: Archae - 72; Bacteria - 1697; Metazoa - 8826; Fungi - 3151; Plants - 2780; Viruses - 610; Other Eukaryotes - 9272 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18481584..18484393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333404.1 → NP_001319184.1  MuDR family transposase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLW1, A0A384KML1, A0A7G2E1N8, Q9C702
    Conserved Domains (2) summary
    PLN03097
    Location:357 → 689
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam03108
    Location:179 → 243
    DBD_Tnp_Mut; MuDR family transposase

  2. NM_103879.3 → NP_175414.1  MuDR family transposase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLW1, A0A384KML1, A0A7G2E1N8, Q9C702
    Conserved Domains (2) summary
    PLN03097
    Location:357 → 689
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam03108
    Location:179 → 243
    DBD_Tnp_Mut; MuDR family transposase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools