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UBC20 ubiquitin-conjugating enzyme 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841471, updated on 18-Sep-2024

Summary

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Official Symbol
UBC20
Official Full Name
ubiquitin-conjugating enzyme 20
Primary source
TAIR:AT1G50490
Locus tag
AT1G50490
See related
Araport:AT1G50490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F12.16; ubiquitin-conjugating enzyme 20
Summary
Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.
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Genomic context

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See UBC20 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (18704805..18706657, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hexokinase-like 1 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene 10-formyltetrahydrofolate synthetase Neighboring gene Membrane trafficking VPS53 family protein Neighboring gene indigoidine synthase A family protein Neighboring gene cytochrome P450, family 705, subfamily A, polypeptide 27 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. Criqui MC, et al. Plant Physiol, 2002 Nov. PMID 12427990, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_103932.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin-conjugating enzyme 20
NP_564572.1
  • ubiquitin-conjugating enzyme 20 (UBC20); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme E2 H10 (InterPro:IPR015582), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme19 (TAIR:AT3G20060.1); Has 10004 Blast hits to 9989 proteins in 393 species: Archae - 0; Bacteria - 0; Metazoa - 4460; Fungi - 2092; Plants - 1828; Viruses - 23; Other Eukaryotes - 1601 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18704805..18706657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103932.4 → NP_564572.1  ubiquitin-conjugating enzyme 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564572.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7T3, Q8L8L3, Q9C6Q4, Q9LPS2
    UniProtKB/TrEMBL
    A0A5S9WNP4, A0A654EIZ0
    Conserved Domains (1) summary
    pfam00179
    Location:39 → 175
    UQ_con; Ubiquitin-conjugating enzyme
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7T3.1

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