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thioredoxin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841732, updated on 18-Sep-2024

Summary

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Official Full Name
thioredoxin family protein
Primary source
TAIR:AT1G52990
Locus tag
AT1G52990
See related
Araport:AT1G52990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L10.14; F8L10_14
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19740400..19743449, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene downregulated in DIF1 11 Neighboring gene GTP-binding family protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
thioredoxin family protein
NP_564620.1
  • thioredoxin family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G65005.1); Has 15228 Blast hits to 15210 proteins in 2870 species: Archae - 230; Bacteria - 9375; Metazoa - 871; Fungi - 596; Plants - 1211; Viruses - 5; Other Eukaryotes - 2940 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19740400..19743449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104177.2 → NP_564620.1  thioredoxin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564620.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HPP4
    Conserved Domains (2) summary
    cd02947
    Location:222 → 310
    TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
    cd06222
    Location:50 → 170
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8

  2. NM_001333567.1 → NP_001321111.1  thioredoxin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQ02
Nucleotide Protein
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