U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RNA-binding S4 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841746, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
RNA-binding S4 domain-containing protein
Primary source
TAIR:AT1G53120
Locus tag
AT1G53120
See related
Araport:AT1G53120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L10.3; F8L10_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (19792751..19794778)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene ncRNA Neighboring gene proton pump-interactor Neighboring gene Stigma-specific Stig1 family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dynamin related protein 5A

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001333579.1
NM_104191.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA-binding S4 domain-containing protein
NP_564622.1
  • RNA-binding S4 domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Photosystem II S4 domain protein (InterPro:IPR017506); Has 1630 Blast hits to 1630 proteins in 768 species: Archae - 0; Bacteria - 1422; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19792751..19794778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104191.5 → NP_564622.1  RNA-binding S4 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564622.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMQ3, Q93YQ0
    Conserved Domains (1) summary
    PLN00051
    Location:54 → 320
    PLN00051; RNA-binding S4 domain-containing protein; Provisional

  2. NM_001333579.1 → NP_001322401.1  RNA-binding S4 domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATW8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools