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TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841756, updated on 18-Sep-2024

Summary

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Official Symbol
TCP3
Official Full Name
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Primary source
TAIR:AT1G53230
Locus tag
AT1G53230
See related
Araport:AT1G53230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
cycloidea and PCF transcription factor 3; F12M16.13; F12M16_13; TEOSINTE BRANCHED 1
Summary
Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterochronic regulation of leaf differentiation.
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Genomic context

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See TCP3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (19849788..19851725, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene sodium/calcium exchanger family protein / calcium-binding EF hand family protein Neighboring gene tRNA-Ile Neighboring gene ncRNA Neighboring gene Lactate/malate dehydrogenase family protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The TCP domain: a motif found in proteins regulating plant growth and development. Cubas P, et al. Plant J, 1999 Apr. PMID 10363373
  2. De Novo Shoot Regeneration Controlled by HEN1 and TCP3/4 in Arabidopsis. Yang W, et al. Plant Cell Physiol, 2020 Sep 1. PMID 32579181
  3. An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development. Qin G, et al. Plant Cell, 2005 Oct. PMID 16169896, Free PMC Article
  4. TCP transcription factors interact with AS2 in the repression of class-I KNOX genes in Arabidopsis thaliana. Li Z, et al. Plant J, 2012 Jul. PMID 22380849
  5. A protracted and dynamic maturation schedule underlies Arabidopsis leaf development. Efroni I, et al. Plant Cell, 2008 Sep. PMID 18805992, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. De Novo Shoot Regeneration Controlled by HEN1 and TCP3/4 in Arabidopsis.
    Title: De Novo Shoot Regeneration Controlled by HEN1 and TCP3/4 in Arabidopsis.
  2. TCP3 interactions with R2R3-MYBs lead to enhanced flavonoid production, which further negatively modulates the auxin response.
    Title: TCP3 interacts with R2R3-MYB proteins, promotes flavonoid biosynthesis and negatively regulates the auxin response in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001333584.1
NM_104201.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf development TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within leaf morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf senescence IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of development, heterochronic IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
NP_564624.2
  • ''TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3'' (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3); Has 1510 Blast hits to 1508 proteins in 333 species: Archae - 0; Bacteria - 12; Metazoa - 43; Fungi - 12; Plants - 1439; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19849788..19851725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104201.3 → NP_564624.2  TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564624.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81369, Q9MAH8
    UniProtKB/TrEMBL
    A0A178WDV9, A0A5S9WP86, A0A654EI17
    Conserved Domains (1) summary
    cl23822
    Location:47 → 109
    TCP; TCP family transcription factor

  2. NM_001333584.1 → NP_001322492.1  TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81369, Q9MAH8
    UniProtKB/TrEMBL
    A0A178WDV9, A0A5S9WP86, A0A654EI17
    Conserved Domains (1) summary
    cl23822
    Location:47 → 109
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MAH8.1

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