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MSL4 mechanosensitive channel of small conductance-like 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841782, updated on 18-Sep-2024

Summary

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Official Symbol
MSL4
Official Full Name
mechanosensitive channel of small conductance-like 4
Primary source
TAIR:AT1G53470
Locus tag
AT1G53470
See related
Araport:AT1G53470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mechanosensitive channel of small conductance-like 4; T3F20.21; T3F20_21
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Genomic context

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See MSL4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19958380..19961827)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene epstein-barr nuclear antigen Neighboring gene craniofacial development protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene mto 1 responding down 1 Neighboring gene ncRNA Neighboring gene NAD-dependent epimerase/dehydratase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104225.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
mechanosensitive channel of small conductance-like 4
NP_175752.1
  • mechanosensitive channel of small conductance-like 4 (MSL4); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1); Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163; Bacteria - 2328; Metazoa - 1; Fungi - 210; Plants - 229; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19958380..19961827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104225.2 → NP_175752.1  mechanosensitive channel of small conductance-like 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175752.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8K9, Q9LPG3
    UniProtKB/TrEMBL
    A0A178WMG5, A0A5S9WLH4
    Conserved Domains (1) summary
    cl39057
    Location:676 → 847
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPG3.1

Gene LinkOut

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