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ATG18H autophagy 18h-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841912, updated on 18-Sep-2024

Summary

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Official Symbol
ATG18H
Official Full Name
autophagy 18h-like protein
Primary source
TAIR:AT1G54710
Locus tag
AT1G54710
See related
Araport:AT1G54710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATATG18H; homolog of yeast autophagy 18 (ATG18) H; T22H22.14; T22H22_14
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Genomic context

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See ATG18H in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (20416770..20421156, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene gamma histone Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene early-responsive to dehydration protein-related / ERD protein-like protein Neighboring gene Major facilitator superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana. Xiong Y, et al. Plant J, 2005 May. PMID 15860012
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333664.1
NM_104346.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
autophagy 18h-like protein
NP_564664.1
  • homolog of yeast autophagy 18 (ATG18) H (ATG18H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 852 Blast hits to 850 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 255; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20416770..20421156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104346.3 → NP_564664.1  autophagy 18h-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564664.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H1Q5, Q9C5I7, Q9ZVM1
    UniProtKB/TrEMBL
    A0A178W703, A0A5S9WLW2, A0A654EIG3
    Conserved Domains (3) summary
    sd00039
    Location:385 → 439
    7WD40; WD40 repeat [structural motif]
    pfam12490
    Location:517 → 729
    BCAS3; Breast carcinoma amplified sequence 3
    cl29593
    Location:332 → 410
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_001333664.1 → NP_001323099.1  autophagy 18h-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AW11, A0A5S9WLW2, A0A654EIG3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1Q5.1

Gene LinkOut

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